[intlist] = spotinthist(cellList)
[intlist1,intlist2] = spotinthist(cellList1,cellList2)
This function plots a histogram of the intensities of all spots in every cell
in a population. Note, the cells manually detected with spotfinderM will
all have zero intensity.
<cellList> - an array that contains cell meshes. You can
drag and drop the file with the data into MATLAB workspace or open it using
MATLAB Import Tool. The default name of the variable is cellList, but
it can be renamed.
<cellList1>, <cellList2> - you can load two arrays, they will
be plotted together for comparison.
<xarray> - an array of x values for the histogram, which serve the
centers of bins of the histogram (the boundaries will be in between, for
example [1 2 3 4 5] to display all the spots with intensities less than 1.5
in the first bin, between 1.5 and 2.5 in the second, etc.).
<normfactor>, <normfactor1>, <normfactor2> - conversion
factors from image units. Use only if normalization is known.
'overlap' - indicate this if you wish the histograms to overlap,
otherwise they will be displayed separately.
<intlist>, <intlist1>, <intlist2> - arrays containing
the intensity of every spot to save and plot separately.
<nooutput> - blocks standard output (type of data processed, mean,
and standard deviation).